Show Posts

This section allows you to view all posts made by this member. Note that you can only see posts made in areas you currently have access to.


Topics - jason

Pages: [1]
1
General Discussion / Error converting PWM to PSAM
« on: December 18, 2017, 02:01:28 pm »
Hi, I've downloaded a set of PWMs from YeTFaSCo: http://yetfasco.ccbr.utoronto.ca/1.02/Downloads/Expert_PWMs.tar.gz

I would like to use these PWMs with the Transfactivity program.

However, I can't seem to get the convert2psam utility to work on these... I assume that it expects a slightly different PWM format than the ones provided by the download, but I can't figure out exactly what format it expects. Could you perhaps let me know if I'm doing something wrong?

Here's the command I ran and the error:

 bin/Convert2PSAM -source=pw -inp=data/yetfasco/ALIGNED_ENOLOGO_FORMAT_PWMS/YDR146C_569.pwm -pwmfile=test.xml

<data/yetfasco/ALIGNED_ENOLOGO_FORMAT_PWMS/YDR146C_569.pwm> not in PWM format: [A   0.381537584575116   1.07668300283655   -800   -800   1.68965987938785   -800   -800   0.989220160345073] contains invalid W a


Pages: [1]
Created and maintained by Dr. Xiang-Jun Lu [律祥俊]. See also http://forum.x3dna.org and http://x3dna.org