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Messages - melodypluto

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General Discussion / Re: What do the bases mean in PSAM?
« on: December 05, 2016, 09:33:10 pm »
Thank you very much! ;D

General Discussion / What do the bases mean in PSAM?
« on: December 01, 2016, 01:20:13 am »
Dear administrator,
I used the Convert2PSAM in order to convert the PWM into PSAM.
CODE: Convert2PSAM  -source=PW -inpfile=/mnt/tools/REDUCE-Suite-v2.2/data/formats/pwm_ex.dat -psamfile=psam=pw2psam.xml
However, there are some bases named W, instead of anyone among ACGT.
Thus I wonder the meaning of W in PSAM. Is there other type of base in PSAM? If so, what do them mean?
Could it be possible for you to show me the details about the bases in PSAM?

Thank you,
Pan Shen

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