REDUCE Suite
General Category => General Discussion => Topic started by: amanzour on September 17, 2019, 10:48:43 pm
-
Hi
How can I calculate the change between binding affinity of a transcription factor binding site and its corresponding mutated version of it. TF protein is known.
Would it be possible to do it web based?
Basically inputting: Sequence, mutant, TF and outputting change in TF binding affinity
Thank you so much beforehand
-
Thanks for using the REDUCE Suite and for posting your questions on the Forum.
Unfortunately, I do not know how to calculate the change in binding affinity between wild and mutated sites of a TF binding site. Currently, the REDUCE Suite is command-line based only, no web interface to it.
Best regards,
Xiang-Jun
-
Thank you Lu.
How can I install Reducesuite?
are there a series of command line for linux?
Thank you
Amir
-
Did you read the Documentation Section (http://reducesuite.bussemakerlab.org/documentation/)?