Author Topic: "Affinity Profile"  (Read 57 times)

mina

  • Normal
  • *
  • Posts: 2
    • View Profile
"Affinity Profile"
« on: January 01, 2019, 04:58:35 am »
Hi,
I am a new user of REDUCE suite.
Is there anybody to help me in using "Affinity Profile". How could we find the PSAM file for our DNA queries to run the computational calculation of binding affinity.

Best Regards,
Mina

xiangjun

  • Administrator
  • Normal
  • *****
  • Posts: 34
    • View Profile
Re: "Affinity Profile"
« Reply #1 on: January 01, 2019, 11:46:54 am »
Hi Mina,

Thanks for using the REDUCE Suite and for posting your questions on the Forum.

Type AffinityProfile -h, and try the examples, on how to use the program. PSAM is a MatrixREDUCE-specific term and can be derived from running MatrixREDUCE. You may also run Convert2PSAM to convert commonly-used formats to PSAM. As with AffinityProfile -h, you can type -h or --help of these programs for helpful information with examples.

You may also want to try other (more sophisticated) software tools developed by the Bussemaker Lab.

Best regards,

Xiang-Jun

 

Created and maintained by Dr. Xiang-Jun Lu [律祥俊]. See also http://forum.x3dna.org and http://x3dna.org